Ontario Food Safety Research Program - Compendium 2006-2007| Ontario Food Safety Research Program Compendium Index Page |
Table of Contents
PrefaceToday's investments in food safety research result in tomorrow's savings in health care spending, industry savings and an increased ability to compete on the world stage. The Ontario Ministry of Agriculture, Food and Rural Affairs (OMAFRA) is committed to making the Ontario Food Safety System a world-class system so Ontarians can continue to enjoy one of the safest food supplies in the world. For these reasons OMAFRA is dedicated to supporting state-of-the-art food safety research. We are pleased to announce the funding of seven new research projects that will increase our capacity to test the Ontario food supply for pathogens, provide insight into effective implementation of food safety systems, and advance our knowledge and ability regarding managing food safety risks. With these new projects we are investing $500,000 dollars in research projects being performed at four research institutions across Ontario, including the University of Guelph, the University of Toronto, Health Canada and the National Research Council. This provincial investment has leveraged an additional $300,000in financial and in-kind support from research partners. Furthermore, the program will be contributing to the training of highly qualified personnel by funding a total of 7 Ph.D., M.Sc. and undergraduate students. This was the seventh year of the competitive Food Safety Research Program and it builds on the achievements from previous years, in which it has invested $5.3 million in 52 research projects. The Food Safety Research Program has been successful in attracting excellent researchers, in achieving its stated objectives, in fostering collaboration in food safety research, and in disseminating results of research promptly and widely. For additional information on OMAFRA food safety research we encourage you to visit our website. For further information on any specific projects listed in this compendium you are encouraged to contact the lead researcher directly. Finally we would like to thank the many researchers, universities, federal and provincial government departments and industry organizations that partner with OMAFRA to fund, perform and to communicate research results. This multidisciplinary and collaborative approach is essential to the success of our program and helps foster innovative research and the important technological development and discovery necessary to meet the challenges ahead. Foodborne pathogens evolve and new hazards and vehicles of infection continue to emerge so we must be proactive and remain vigilant in our efforts to identify and manage these risks. The projects funded by the Food Safety Research Program contribute to these efforts, benefiting the Ontario agri-food industry and enhancing the safety of the Ontario food supply for the benefit of all our citizens.
Gwen Zellen,
DVM Section One: Food Safety Research Program 2006/07BackgroundOntario is recognized throughout the world for the quality and safety of its agri-food products. To retain this position of leadership in food safety, the province has initiated science-based, field-to-fork food safety system improvements. In partnership with the Ministry of Health and Long-term Care (MOHLTC) and the Ministry of Natural Resources (MNR), the Ontario Ministry of Agriculture, Food and Rural Affairs (OMAFRA) led an Ontario food safety system review which was completed in 1999. . During this process, OMAFRA recognized the need to update its standards and requirements to keep pace with changes in scientific information, technology, consumer behavior, consumer lifestyles and industry practices. The review was designed to improve Ontario's food safety system by increasing the government's capacity to maintain high standards of food safety, protect public health and increase the marketability of Ontario food products. The overall goal was to build a:
Program DescriptionThe Ontario Food Safety Research Program (FSRP) is a competitive research fund established in 2000/01 to fund innovative food safety research projects that enhance the safety of Ontario's food through:
Ultimate results of the program are new or enhanced technologies and diagnostic tools that support the agri-food industry and government regulatory and laboratory programs; new knowledge about emerging food hazards and contaminants; new strategies to reduce, eliminate or otherwise manage food safety risks. These results contribute to and support the implementation of Hazard Analysis Critical Control Point (HACCP) and quality assurance programs throughout the food chain. A Research Requirements Document is issued on an annual basis to solicit research proposals from academia, industry, and government or partnership networks with demonstrated capability to perform quality research in their area of expertise. For the 2006/07 competition researchers were eligible to apply for up to $100,000 per project. Projects must be completed within two years. The program strongly encourages applicants to demonstrate extensive collaboration and secure matching funding if possible. OMAFRA staff and external peer reviewers review submitted proposals. In 2006/07, 42 Letters of Intent were received in response to the call for proposals. The full abstracts of these newly funded projects, as well as those from previous FSRP funding cycles, can be found on the OMAFRA website: http://www.omafra.gov.on.ca/english/research/foodsafety/2006/index.html With these new projects, OMAFRA is investing $500,000 dollars for research that will be performed at four research institutions across Ontario, including the University of Guelph, the University of Toronto at Mississauga, Health Canada and the National Research Council. To be successful in obtaining the program funds researchers must satisfy the following program criteria:
Overall the project proposals should:
Statistical Summary:Overall FSRP Funding in 2006/07
There were 16 new researchers who applied to the program for the first time. Applications and Awards by FSRP Priority Area:
FSRP 2006/07 Funding HighlightsThree awarded projects focus on the development or validation of detection methodology including the development of a novel biosensor for pathogen detection; novel means of concentrating foodborne viruses; and validation of a viral detection method for norovirus and hepatits A to enhance the capability for testing Ontario food samples for foodborne viruses. Three awarded projects deal with innovative approaches to eliminate, reduce or otherwise manage food safety hazards, such as: the use of biocontrol agents to control pathogens in minimally processed produce; the decontamination of meat by ultraviolet light and hydrogen peroxide; and reducing foodborne pathogens at the source in poultry. A fourth risk management project is evaluating factors that influence employee adherence to food safety practices in the Ontario meat industry. There were no risk assessment proposals funded in this current round of funding. The FSRP wishes to thank the peer reviewers who participated in the program review process for their service and dedication to the Food Safety Research Program. Section Two: AbstractsDetection Methodology (DM)DM1: Project Title: Electrokinetic Control of Microfluidic Biosensors for Rapid Detection of Low Quantities of DNA Markers of PathogensPrincipal
Researcher: Collaborating Researcher:
Project Duration: 2007-2009 Contact Information: Abstract: Expected Impact of Project Outcomes on Food Safety in Ontario: Two key challenges
exist that must be overcome prior to the implementation of practical biosensor
and biochip technologies for testing of food samples for nucleic acids that are
indicative of pathogenic contaminants. These are: (1) the provision of stable,
reproducible and self-contained detection technologies to achieve the desired
device performance, in a form that is commensurate with large scale manufacture
of such devices, and, (2) to rapidly process on-line statistically representative
samples (e.g. liters of fluid or grams of tissue) and deliver isolated target
molecules to the sensing device in a small volume aliquot. In an earlier project
funded by OMAFRA, a methodology was developed for rapidly concentrating target
nucleic acids from bacteria such as E. coli from food and water samples. This
new project will address the key challenge of creation of new technology for near
real-time automated and high throughput analysis of pathogens in foodstuffs for
the Ontario food industry. This has generated significant interest by diagnostic
test and service providers in Ontario. The new technology developed in this research
will be transferred for commercialization. The research is jointly supported by
Safeguard Biosystems, an Ontario company that has diagnostics as its primary market
niche and is developing a variety of tests for animal pathogens. Safeguard brings
international partners to Ontario, including the Veterinary Laboratory Agency
of the United Kingdom and the Argonne National Laboratories in the United States. DM2: A Novel Carbohydrate-based Capture Method for the Isolation and Concentration of NorovirusesPrincipal Researcher:
Collaborating Researcher:
Project Duration: 2007-2009 Contact Information: Abstract: A detection and genotyping method is currently being developed in our laboratory for a number of enteric viruses. In the course of these studies, we have discovered that the cationic beads used for viral isolation, while highly effective at capturing other enteric viruses from a variety of food matrices, have not been as efficient in achieving the 10 particle detection limit targeted for NoV. The DNA microarray platform developed in the above project is working well for the identification and genotyping of NoV, however, it is important to develop a more efficient capture system to isolate and concentrate these most prevalent enteric viruses. Capture systems exist that could be implemented
for the NoV, but these use antibodies specific to each strain of NoV as the capture
reagent. There are three different genogroups of noroviruses known to infect humans,
encompassing 29 different genetic clusters and an untold number of different strains.
Thus, the immunological approach is too specific. In addition, antibodies to new
emerging strains may not be available. In our proposed method, we will take advantage
of the histo-blood group antigen receptors used by NoV for entry into host cells.
The naturally high affinity of NoV for these carbohydrates cannot be altered without
rendering the viral particle non-infectious and, as such, all current and emerging
strains of NoV will be captured by our system. Benefit to Food Safety in Ontario: The major benefit of this work will
be the development of a method with improved sensitivity and specificity for the
detection of NoV in foods which will be suitable for rapid and routine use. After
development and technology transfer, this method will increase the number of facilities
that are able to perform diagnostic testing of food in Ontario. The result will
be to facilitate the identification, prevention and control of NoV in Ontario,
aid in epidemiological investigations of outbreaks of NoV infection and help in
performing risk assessment of potential exposure to contaminated items. Taken
together, these benefits will lead to an improvement in the safety of food products
and the protection of public health. If contaminated foods can be accurately identified
and the source of contamination pinpointed, the financial losses associated with
NoV contamination may be reduced. The method and its implementation across Ontario
will also provide the necessary tools for regulators and the food industry to
initiate programs aimed at monitoring foods for the presence of NoV. In addition
to the improvement in public safety this provides, it will also enhance the Ontario
food industry's economic opportunities for trade by increasing the confidence
that its agri-food products are NoV free. DM3: Detection of Norovirus and Hepatitis A in Raw Produce using RT-PCR ProtocolsPrincipal
Researcher: Collaborating Researchers:
Project Duration: 2007-2008 Contact
Information: Abstract: Challenges for the development of a sensitive and specific RT-PCR detection method include the elution and concentration of low virus numbers in naturally contaminated foods and the removal of inherent PCR inhibitors. Recently, elution/concentration procedures, extraction procedures and RT-PCR assays for NoV and HAV detection in green onions were developed by scientists at the Canadian Food Inspection Agency (CFIA) and Agriculture and Agrifood Canada (AAFC). In collaboration with these scientists, we propose to extend the validation of these methods by adapting and optimizing these methods for HAV and NoV detection in fresh produce such as cut and uncut cabbage, lettuce and green peppers, which are often eaten raw. The goal of this project is to adapt and optimize a real-time RT- PCR method or develop an alternative method for the optimal detection of the virus. Furthermore, elution/concentration and extraction methods will be adapted to optimize concentration of HAV and NoV and removal of PCR inhibitors. The selected sample preparation procedures will then be combined with the real-time PCR assay and validated using artificially-contaminated samples. Expected Impact of Project Outcomes on Food Safety in Ontario: Noroviruses (NoV) and hepatitis A virus (HAV) are the most common viruses associated with foodborne illnesses. There is a public health concern regarding the rapid spread of these two viruses in sporadic and outbreak situations associated with the consumption of contaminated foods. It is estimated that 67 percent of foodborne illnesses might be caused by NoV in the United States. In Ontario about 50 percent of the HAV reported cases are associated with foodborne or waterborne transmission. The primary transmission mode for NoV and HAV is by the fecal-oral route and these viruses are either transmitted directly by person-to-person contact or indirectly via contaminated food or water. These two viruses can remain stable in the environment for long periods and have been found to be resistant to commercial disinfectants, heat and pH changes Several major steps are important in the development of a sensitive and specific real-time RT-PCR method for detection of low numbers of NoV and HAV in foods: (1) elution and concentration of virus from the matrix, (2) extraction/purification of viral RNA (3) optimization of the PCR mixture including primers and (4) detection/quantification. In this study we propose to optimize and validate these steps for detection of these viruses in produce, especially for routine testing of food samples submitted in sporadic and outbreak cases. A major benefit from this study is to provide standardized methods for NoV and HAV detection in various diagnostic labs in Ontario and across Canada. It will also be a valuable tool for generating surveillance and risk assessment data on high-risk foods such as fresh produce and also in the elucidation of the sources of viral contamination. Risk AssessmentThere were no risk assessment projects funded this year. Risk Management and ControlRM1: Reduction of Foodborne Pathogens at SourcePrincipal
Researcher: Collaborating
Researchers: Project Duration: 2007-2009 Contact
Information: Abstract Contaminated poultry are an important risk factor for Campylobacter jejuni and Salmonella enterica serovar Typhimurium and Heidelberg infection in humans. NRC-IBS has engineered and patented a superior xylanase supplement that is able to resist extreme temperatures used during animal feed pelleting and remains active in the chicken gastrointestinal tract (http://ibs-isb.nrc-cnrc.gc.ca/ourstories/iogenstory_e.html). Although there have been several studies demonstrating that exogenous enzymes such as xylanase improved nutrient digestibility and broiler chicken performance, there are no studies that we noted in the literature examining the effect of xylanase supplementation on Salmonella colonization in broilers. Thus, our experiments to examine whether xylanase supplementation plays any role in S. Typhimurium and Heidelberg colonization are novel and warranted based on the preliminary data we have obtained for C. jejuni. We have previously shown that viscosity affects C. jejuni infectivity and that supplementation of poultry feed with the high-efficiency feed supplement, xylanase, reduces C. jejuni colonization in leghorn chickens by 1-5 logs. This project aims to further investigate the role of chicken mucin viscosity and carbohydrate profiles on C. jejuni colonization. We will also extend the xylanase studies to broiler chickens and compare enzyme dose, type of feed and other strains of C. jejuni and Salmonella with the intent of developing a cost-effective animal feed supplement that also reduces foodborne pathogens at source in order to improve food safety in Ontario. Specifically, this project aims to:
Expected Impact of Project Outcomes on Food Safety in Ontario: C. jejuni
and S. enterica serovars Typhimurium and Heidelberg are significant causes
of gastroenteritis in Canada resulting in a considerable health burden to our
economy. One of the key risk factors for infection is contaminated poultry. We
will expand upon the xylanase study by Fernandez et al. (Cell Mol. Life Sci. 2000)
and our own studies (OMAF # FS040718) to understand the changes induced by xylanase
and how they influence bacterial colonization of poultry. Our group has strong
expertise in the analysis of colonization factors (Szymanski/Twine) and carbohydrates
(Li), development of animal models (Szymanski) and xylanase engineering (Sung).
We aim to identify the mucin and/or bacterial component responsible for reduced
colonization. Chicken feed will be supplemented with commercial and NRC-modified
xylanases to determine reduction of bacterial colonization and reproducibility
in leghorns and broilers. Together with Iogen Corporation, the NRC enzyme has
been engineered to resist extreme temperatures during animal feed pelleting, remains
active in the chicken gastrointestinal tract and facilitates efficient feed conversion
through better digestion and assimilation, leading to enhanced meat and egg production.
Thus, the modified xylanases, currently approved for use in pulp bleaching with
annual sales in the millions, and recently approved for use in poultry feed by
the CFIA, have applications in food safety and the livestock industry. RM2: Biocontrol of Human Pathogens in Tomato and Sprouted Seed Production using Bacterial Isolates Derived from Natural EnvironmentsPrincipal Researcher:
Collaborating Researchers: Project Duration: 2007-2009 Contact Information: Abstract: The numerous foodborne illness outbreaks
linked to fresh produce continues to represent a significant food safety issue.
It is well established that post-harvest washing of produce can reduce but not
eliminate pathogens. Indeed, there is evidence that washing stimulates the growth
of pathogens during storage due to reduction in competitive background microflora.
The objective of this project is to develop a biocontrol method that can be applied
pre- and post harvest to reduce or eliminate the growth of pathogens such as Salmonella
on tomato fruit and sprouting seeds. The approach will be to isolate antagonistic
bacteria (for example, Enterobacter and Bacillus spp) that alone or in combination
can inhibit the growth of pathogens (Salmonella, E. coli O157 and Listeria
monocytogenes) either through production of antimicrobial agents and/or competitive
exclusion. The isolates will be recovered from various sources such as processing
environments, soil and fresh produce. The synergistic activity of introducing
pathogen infecting bacteriophage into the biocontrol bacterial cocktail will be
assessed. Health agencies
promote the increased consumption of fresh fruit and vegetables to prevent chronic
diseases, in addition to improving the general health of the population. However,
in recent years health advisories have been issued to warn vulnerable groups to
avoid consuming certain types of produce because of food safety risks. In November
2005, one of the largest salmonellosis outbreaks within Ontario was linked to
contaminated mung bean sprouts. In 2004, a further Salmonella outbreak
within Ontario implicating Roma tomatoes resulted in hospitalization of 14 percent
of those infected. RM3: Decontamination of Raw and Ready-to-Eat Meat Surfaces using a Combination of Ultraviolet Light and Hydrogen PeroxidePrincipal Researcher: Collaborating Researchers: Project Duration: 2007-2009 Contact Information: Abstract: The
carriage of enteric pathogens such as E. coli O157:H7, Salmonella,
Campylobacter jejuni and Listeria monocytogenes on meat continues to represent
a significant food safety issue. Although there are various methods used to decontaminate
carcasses (e.g.,, acid rinse, hot water pasteurization or stream vacuum), the
log reductions achieved are limited by the presence of pathogens in protective
pores on the meat surface. In this project, the efficacy of a UV and hydrogen
peroxide-based treatment to inactivate pathogens on raw and ready-to-eat meat
surfaces (beef, pork and chicken) will be evaluated. Although product recalls associated with raw and RTE meats are rare within Ontario, any foodborne illness outbreaks can have a devastating effect on markets and consumer health. The technology to be developed will provide an effective low cost method for inactivating pathogens on primal cuts and deli meats prior to packaging. Reducing the carriage of pathogens on meat products will improve food safety and reduce the number of product recalls. RM4: Validation of Factors Identified as Influencing Employee Adherence to Practices in Food Safety Systems: a Meat Industry PerspectiveProject Leader: Project Duration: Contact
Information: Abstract: It is generally accepted that there are barriers to the effective implementation of HACCP, but little research has been done to show the potential impact of various "people-related" factors on the likelihood of success. Several researchers propose that new ways of viewing issues related to HACCP implementation need to be considered to develop effective ways of overcoming the barriers and suggest behavioural research may make an important contribution to the food safety management field. The proposed research expands on new developments in food quality and safety research. A tool to measure the effectiveness of food quality management systems in the bakery sector in The Netherlands was validated in 2004. In 2006, the model was adapted to provide a theoretical model for food safety systems. The proposed research will adapt this model to include an industry perspective and will be specific to the Ontario meat processing industry. It is hypothesized that three main factors organizational characteristics, employee characteristics and the production system play a role in employee adherence to HACCP. The study will begin with qualitative interviews with meat industry personnel to determine the applicability of the model for the meat sector. The results will be used as the basis for a quantitative survey that will be administered to personnel employed in a sample of Ontario meat processing plants. Survey data will be used to validate the model for the meat industry. This work will involve collaboration among the University of Guelph, OMAFRA, the Ontario Independent Meat Processors and the Alliance of Ontario Food Processors. Expected Impact of Project Outcomes on Food Safety in Ontario: The primary benefit of the
proposed project is the validation of a model that will identify key factors affecting
the implementation of HACCP in the meat industry. Validation of these factors
will enhance HACCP implementation and enable the development of strategies or
best practices for effective HACCP systems to address some of the barriers, thereby
contributing to a reduction of the economic and human cost of foodborne illness
from microbes in meat. Although the proposed research is focused on HACCP in the
meat sector, it may be relevant to other food safety programs, e.g., on-farm food
safety, and other food sectors. Section Three: Status of previously funded projects (2000/01 - 2004/05)The details about previously funded projects by the program are available on the OMAFRA website. Projects for each
section are listed alphabetically by the lead researcher's last name. Detection Methodology (DM)
Risk Assessment (RA)
Risk Management (RM)
For more information: Toll Free: 1-888-466-2372 ext. 64554 Local: (519) 826-4554 E-mail: research.omafra@ontario.ca
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